FastQCFastQC Report
Sat 25 May 2024
EGAF00007981336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3440195
Total Bases10.1 Gbp
Sequences flagged as poor quality0
Sequence length12-262080
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA221630.6442367365803392No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG162680.47288017103681623No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT73840.2146389957546011No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT67540.19632608035300325No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40900.1188886095119608No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)