FastQCFastQC Report
Sat 25 May 2024
EGAF00007981341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2441949
Total Bases11.1 Gbp
Sequences flagged as poor quality0
Sequence length49-530376
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG489902.006184404342597No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT201560.8254062636033758No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA63420.2597105836362676No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50500.20680202575893272No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)