FastQCFastQC Report
Thu 23 May 2024
EGAF00007981345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2377201
Total Bases9.7 Gbp
Sequences flagged as poor quality0
Sequence length30-310583
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG392051.6492084598651944No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT166770.7015393313396722No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA55640.23405677517382836No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT49940.2100789962649351No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)