FastQCFastQC Report
Thu 16 May 2024
EGAF00007981346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1095235
Total Bases3.4 Gbp
Sequences flagged as poor quality0
Sequence length57-202715
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA225212.0562710285920374No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG128561.173812012946993No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG76190.6956497920537602No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT74820.6831410610508247No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT54990.5020840276287737No Hit
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12810.11696120010773943No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)