FastQCFastQC Report
Mon 13 May 2024
EGAF00007981347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences998736
Total Bases5.8 Gbp
Sequences flagged as poor quality0
Sequence length102-240778
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG162401.6260553339421027No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT66300.6638390926130628No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA48010.4807076144246327No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14050.14067781676038513No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)