FastQCFastQC Report
Fri 3 May 2024
EGAF00007981348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences627121
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length41-263486
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA82541.3161734338349378No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG66981.0680554470349424No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT27360.4362794420853392No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24670.3933850086346973No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16140.25736660070385137No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)