FastQCFastQC Report
Tue 14 May 2024
EGAF00007981349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences931780
Total Bases6.3 Gbp
Sequences flagged as poor quality0
Sequence length34-317172
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG123731.3278885573847905No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT52290.5611839704651312No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA26190.28107493185086607No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18430.19779347056172059No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)