FastQCFastQC Report
Thu 9 May 2024
EGAF00007981350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424657
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length13-260543
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA58861.386059808268791No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG45201.064388435843516No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT22960.5406716479417506No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT20390.4801522169656923No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13680.32214234075971904No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)