FastQCFastQC Report
Mon 13 May 2024
EGAF00007981352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences990604
Total Bases5.8 Gbp
Sequences flagged as poor quality0
Sequence length61-260955
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG52830.5333109900626285No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA49190.4965657316142475No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT27310.27569038687507824No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT20740.20936721434599495No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12630.12749797093490436No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)