FastQCFastQC Report
Wed 22 May 2024
EGAF00007981353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1918081
Total Bases10.9 Gbp
Sequences flagged as poor quality0
Sequence length47-269079
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG361901.8867816322668332No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT150630.7853161571383065No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA102410.5339190576414656No Hit
ATTGTACTTCGTTCAGTTACGTATTGCTGGCCTACACGACGCTCTTCCGA23310.12152771441873414Illumina Single End Sequencing Primer (95% over 21bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)