FastQCFastQC Report
Thu 23 May 2024
EGAF00007981354

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981354
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2012200
Total Bases10.2 Gbp
Sequences flagged as poor quality0
Sequence length26-263429
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA238001.1827850114302754No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG234271.164248086671305No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT106040.5269853891263294No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT69420.3449955272835702No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45720.2272139946327403No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)