FastQCFastQC Report
Thu 9 May 2024
EGAF00007981356

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981356
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences336356
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length4-165813
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA43361.2891103473700485No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG28120.8360189798903542No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT16710.49679506237438903No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16440.4887678531080165No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT12620.3751977071911903No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)