FastQCFastQC Report
Wed 22 May 2024
EGAF00007981358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2028168
Total Bases7 Gbp
Sequences flagged as poor quality0
Sequence length34-1002021
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA281691.3888888888888888No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG211261.0416296874815105No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT96210.4743689871844936No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT93550.46125370284907363No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG74950.36954532366155074No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)