FastQCFastQC Report
Sat 25 May 2024
EGAF00007981361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2820320
Total Bases8.9 Gbp
Sequences flagged as poor quality0
Sequence length89-320581
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG151920.5386622794576501No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT63790.22618000794236115No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA41500.1471464231009247No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)