FastQCFastQC Report
Thu 16 May 2024
EGAF00007981362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1256050
Total Bases3.8 Gbp
Sequences flagged as poor quality0
Sequence length53-823958
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA77190.6145455992993909No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG47530.3784085028462243No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30140.23995860037418892No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT19740.15715934875204013No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14890.11854623621671112No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)