FastQCFastQC Report
Wed 31 May 2023
EGAF00007984864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007984864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70119377
Sequences flagged as poor quality0
Sequence length150
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCGGAGGAGAGTAGTCTGAATTGGGTTATGAGGTCCCCTGCGGGGTAC2759730.3935759440646485No Hit
AGGCAGAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTAGTA2363080.3370081282952642No Hit
GGACAGCAAGAAAGCGAGCTTAGTGATACTTGTGGGCCAGGGCATTAGCC2271500.3239475444854566No Hit
GGCGGAGGAGAGTAGTCTGAATTGGGTTATGAGGTCCCCTGCGGGGTACC1729260.24661656648774843No Hit
GTCTGAATTGGGTTATGAGGTCCCCTGCGGGGTACCTCACCTCAGCCATT1327370.1893014537194191No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC1273650.18164023334092086No Hit
GGCAGAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTAGTAG1229320.1753181577754178No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT1197450.17077305179137572No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT1154550.1646549141473405No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT1104750.1575527403787401No Hit
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG1084270.15463200706988597No Hit
GTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCCT1016300.14493853817326416No Hit
AATGAAAATAAATGTTTTTTATTAGGCAGAATCCAGATGCTCAAGGCCCT997950.14232157253764532No Hit
GCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTT993960.14175254295257073No Hit
GCGGAGGAGAGTAGTCTGAATTGGGTTATGAGGTCCCCTGCGGGGTACCT981610.13999126090353028No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC975020.13905143509760506No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA971130.13849666690564008No Hit
TGGCAGAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTAGTA890290.12696775671580768No Hit
GTCTGTTCCAAGCTCCGGCAAAGGAGGCATCCGCCGGGCCCCTCCCCGAA832780.11876602953845411No Hit
GCTTAGTGATACTTGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTT827430.11800304500708841No Hit
GCAATGAAAATAAATGTTTTTTATTAGGCAGAATCCAGATGCTCAAGGCC825790.11776915816009033No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA796630.11361053592931951No Hit
GTTGGACTTAGGGAACAAAGGAACCTTTAATAGAAATTGGACAGCAAGAA769100.10968437440623581No Hit
GGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGC703320.10030323001871508No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)