FastQCFastQC Report
Fri 4 Aug 2023
EGAF00007985534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007985534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9208519
Sequences flagged as poor quality0
Sequence length150
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATGTCGAGACCTCTGCGGGCCAGAGTCAAGATCGGAAGAGCGTCGAGT897580.9747278579758591No Hit
GTATGTCGAGACCTCTGCGGGCCAGAGTCAACATCGGAAGAGCGTCGAGT639150.6940855527365475No Hit
GTATGTCGAGACCTCTGCGGGCCAGAGTCAAGATCGGAAGATCGTCGAGT362890.3940807419738179No Hit
GTATGTCGAGACCTCTGCGGGCCAGAGTCAAGATCGGAAGAGCGACGAGT343370.372882979336851No Hit
GTATGTCGAGACCTCTGCGGGCCAGAGTCAACATCGGAAGATCGTCGAGT325610.35359649038026636No Hit
GTATGTCGAGACCTCTGCGGGCCAGAGTCAACATCGGAAGAGCGACGAGT316200.3433776918959498No Hit
GTATGTCGAGACCTCTGCGGGCCAGAGTCAACATCGGAAGATCGACGAGT216810.23544502650209007No Hit
GTATGTCGAGACCTCTGCGGGCCAGAGTCAAGATCGGAAGATCGACGAGT204970.22258736719770028No Hit
GTATGTCGAGACCTCTGCGGGCCAGAGTCAAGATCGGAAGAGCGTCGTGT143330.1556493503461306No Hit
CATCGAATGAAGGAGACGTTCAGCGCGCATAGATCGGAAGAGCGTCGAGT135590.14724408995626767No Hit
GTATGTCGAGACCTCTGCGGGCCAGAGTCAACATCGGAACATCGTCGAGT126600.13748139087295144No Hit
GTATGTCGAGACCTCTGCGGGCCAGAGTCAACATCGGAACAGCGTCGAGT114300.12412419412937084No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)