FastQCFastQC Report
Fri 4 Aug 2023
EGAF00007985538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007985538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4158562
Sequences flagged as poor quality0
Sequence length150
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAATTAATCACTCAGTTGGCCGTAAGCAGATCGGAAGAGCGTCGAGT77760.1869877135413636No Hit
CAGGAATTAATCACTCAGTTGGCCGTAAGCAGATCGGAAGATCGTCGAGT51750.12444205472949543No Hit
GAAGGGAACTTATCCGCACAACGCGGACTAAGATCGGAAGAGCGTCGAGT51400.12360041764436841No Hit
CAGGAATTAATCACTCAGTTGGCCGTAAGCACATCGGAAGAGCGTCGAGT50590.12165262896164587No Hit
CGACACCTATAGGCCTGAGCAGCAATAGATCGGAAGAGCGTCGACTAGGG45170.10861927752910741No Hit
CAGGAATTAATCACTCAGTTGGCCGTAAGCACATCGGAAGATCGTCGAGT44120.10609436627372634No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)