FastQCFastQC Report
Fri 4 Aug 2023
EGAF00007985544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007985544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6238987
Sequences flagged as poor quality0
Sequence length150
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGAGGTACTGGAGCTCCGGTTCAGAGAAAGATCGGAAGAGCGTCGAGT437130.7006425882919776No Hit
AGCGCCTGAGAACCTCTCCAAAGTTGAGATCGGAAGAGCGTCGACTAGGG167090.26781591306409197No Hit
GCGGAGGTACTGGAGCTCCGGTTCAGAGAAACATCGGAAGAGCGTCGAGT165270.26489877282962765No Hit
GCGGAGGTACTGGAGCTCCGGTTCAGAGAAAGATCGGAAGAGCGACGAGT161890.25948122667990814No Hit
GCGGAGGTACTGGAGCTCCGGTTCAGAGAAAGATCGGAAGATCGTCGAGT140880.2258058880391961No Hit
GCGGAGGTACTGGAGCTCCGGTTCAGAGAAAGATCGGAAGATCGACGAGT92500.14826124818019334No Hit
GCGGAGGTACTGGAGCTCCGGTTCAGAGAAACATCGGAAGAGCGACGAGT79440.1273283627614547No Hit
AGCGCCTGAGAACCTCTCCAAAGTTGAGATCGGAAGAGCGTCGACTACGG77980.12498823927666461No Hit
GCGGAGGTACTGGAGCTCCGGTTCAGAGAAACATCGGAAGATCGTCGAGT68740.1101781427016918No Hit
GCGGAGGTACTGGAGCTCCGGTTCAGAGAAAGATCGGAAGAGCGTCGTGT65970.10573831937780925No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)