FastQCFastQC Report
Wed 31 May 2023
EGAF00007986127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007986127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences177281264
Sequences flagged as poor quality0
Sequence length10-150
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCAGGATAGTTCAGACGGTTTCCATTTCCTGAGCGTCTGAGATGTTAG3873370.21848727342106497No Hit
CCCAAATTCTAAGCAGAGTATGTAAATTGGAAGTTAACTTATGCACGCTT2196770.12391439176561829No Hit
GGGGCAATGAATGAAGCGAACAGATTTTCGTTCATTTTGGTTCTCAGGGT2140360.1207324424311415No Hit
GCGGCTGTGAGTGCGTTCGTAGTTTGAGTTTGCTAGGCAGAATAGTAATG1962620.11070656626184705No Hit
GTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTGGGATTTTTTAGGTA1785340.10070663756097768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)