FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165496826
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA3416490.20643840021439447No Hit
CCACCTACTAAGAACGGCCATGCACCAC3047200.18412437710436816No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA2470610.14928443401083716No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)