FastQCFastQC Report
Wed 6 Sep 2023
EGAF00007987056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences194545344
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA8035070.41301785150920906No Hit
CCACCTACTAAGAACGGCCATGCACCAC7152030.36762791917549054No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA6869680.35311459317165667No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG3118770.16031069856906982No Hit
CCACCAACTAAGAACGGCCATGCACCAC2302030.11832871209706258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)