FastQCFastQC Report
Wed 6 Sep 2023
EGAF00007987059

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987059
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences195402632
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA8076510.41332657177309673No Hit
CCACCTACTAAGAACGGCCATGCACCAC7198290.36838244840018325No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA6904950.3533703681125442No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG3161680.16180334766422183No Hit
CCACCAACTAAGAACGGCCATGCACCAC2313660.1184047510680409No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)