FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences169585963
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA16074600.9478732623642914No Hit
CCACCTACTAAGAACGGCCATGCACCAC7043640.41534333829268644No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA5917450.34893512973122665No Hit
ATCCACCAACTAAGAACGGCCATGCACC2998700.17682477647044406No Hit
CCACCAACTAAGAACGGCCATGCACCAC2441190.14395000369222777No Hit
TGTTCGTTATCGGAATTAACCAGACAAA2023690.11933122082751625No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1955080.1152854850374615No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1929010.11374821157810096No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)