FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences172709546
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACCAC9529400.5517587313905625No Hit
CGTTCGTTATCGGAATTAACCAGACAAA7646870.4427589659693738No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA5711700.3307113088004991No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2866290.16596013749002617No Hit
CCACCAACTAAGAACGGCCATGCACCAC2638320.1527605196761967No Hit
ACGAGCTTTTTAACTGCAGCAACTTTAA2249030.1302203643103781No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1839720.1065210373490299No Hit
TGTTCGTTATCGGAATTAACCAGACAAA1740290.10076397282637753No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)