FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987076

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987076
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173587580
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCATCG5285421430.44815418245937No Hit
ATTGGCGT4733591027.269180202869354Illumina PCR Primer Index 6 (100% over 8bp)
TAGTTGTC3656068821.061810989012002No Hit
GCAACAAA3489928720.104714288890946No Hit
CGCCATCA3222230.18562560754634636No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)