FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences175623122
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCACCG4852563227.630548556129185No Hit
CCTACGTA4323904424.620359499132466No Hit
TGCTGAGT4250257824.201014943806772No Hit
ATAGTTAC3930459022.38007703791987No Hit
GAGCACCA2498510.14226543586897403No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)