FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences175623122
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA11458560.6524516743302172No Hit
CCACCTACTAAGAACGGCCATGCACCAC6122400.34861013346522784No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA4798470.27322541276768786No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT2604290.1482885607739054No Hit
ACGAGCTTTTTAACTGCAGCAACTTTAA2436310.13872376098632389No Hit
CCACCAACTAAGAACGGCCATGCACCAC1959830.11159293706212556No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1883670.10725637823475202No Hit
ATCCACCAACTAAGAACGGCCATGCACC1788300.101825999881724No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)