FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987083

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987083
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176521119
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA11517790.6524879326195524No Hit
CCACCTACTAAGAACGGCCATGCACCAC6158310.3488710039278643No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA4826990.27345113306244107No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT2601910.1473993601864715No Hit
ACGAGCTTTTTAACTGCAGCAACTTTAA2452980.13896240936474008No Hit
CCACCAACTAAGAACGGCCATGCACCAC1966090.11137987404215355No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1888950.10700985869005283No Hit
ATCCACCAACTAAGAACGGCCATGCACC1801810.10207333888473707No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)