FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987097

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987097
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39026676
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAGCAT1155260829.601824147155142No Hit
AGGCCGTG952537424.407341276003113No Hit
CCATATGC884445522.662588533033148No Hit
TTTGTACA853427921.867809085252354No Hit
CTTGTACA717100.1837461125308238No Hit
TTGGTACA544450.13950714121797103No Hit
AGGCCGTA417480.10697298432487563No Hit
GACAGCAA408580.10469249289895967No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)