FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39026676
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA1879770.4816628503027006No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA947820.24286464981029898No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA828400.21226506710435702No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC707590.1813093177599855No Hit
GCCTCTAGATAGTCAAGTTCGACCGTCT673510.17257682924366913No Hit
ATGTGTGTACAAAGGGCAGGGACTTAAT662350.16971724673656552No Hit
TGTTCGTTATCGGAATTAACCAGACAAA514160.13174578332010647No Hit
TGACTTTTACTTCCTCTAGATAGTCAAG465310.11922870397673632No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGA428260.10973519753514237No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG421940.10811579238775038No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)