FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987100

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987100
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39500948
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAGCAT1170129329.622815634703247No Hit
AGGCCGTG964947324.428459286597377No Hit
CCATATGC894931422.65594739650299No Hit
TTTGTACA864448621.884249461557225No Hit
CTTGTACA725310.18361837796905534No Hit
TTGGTACA553250.14005992970092768No Hit
AGGCCGTA424860.10755691230499075No Hit
GACAGCAA405590.10267854837306689No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)