FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987101

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987101
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39500948
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA1901080.4812745253607584No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA966920.2447839986017551No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA839780.21259742930726627No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC726040.18380318366030102No Hit
GCCTCTAGATAGTCAAGTTCGACCGTCT685180.17345912812016562No Hit
ATGTGTGTACAAAGGGCAGGGACTTAAT673410.17047945279693033No Hit
TGTTCGTTATCGGAATTAACCAGACAAA517140.13091837694629507No Hit
TGACTTTTACTTCCTCTAGATAGTCAAG481300.12184517698157524No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGA432970.109610027587186No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG428030.10835942469026313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)