FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41521718
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCCTT1091831226.295424481231727No Hit
AGTGGAAC1015574924.458884384311844No Hit
CAGATGGG1005308724.21163546267522No Hit
TCACATCA980701223.618993799823023Illumina PCR Primer Index 1 (100% over 8bp)
CAGATGGA1029760.24800515238796236No Hit
GTCTCCTA911730.2195790646234821No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)