FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38522811
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGTGGC1225451931.811071627145797No Hit
GGGTCAAG1054693727.378420022360256No Hit
TACCACCA859968422.323614961535387No Hit
CTAAGTTT654225316.98280273472255No Hit
GGGTCCAG1137280.2952224851919555No Hit
TACCACAA645340.16752152380572644No Hit
CTAAGTTA637260.16542406523760686No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)