FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34066372
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCTAG1036676630.43108318079777No Hit
ACCGGCTC1028246830.183630942561184No Hit
GAGTTAGT660214719.380246889806756No Hit
TTAAAGCA643182118.880264091521106No Hit
ACCGGCTA509230.14948172350140485No Hit
CGTCCTAA405180.11893840647310493No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)