FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987128

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987128
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34066372
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA1622510.47627907075047493No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA810190.23782691036192527No Hit
TTTCCTCTAGATAGTCAAGTTCGACCGT542360.15920685654463No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT471970.13854425120467773No Hit
TTGACTTTTACTTCCTCTAGATAGTCAA380250.11162033926007736No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)