FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987130

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987130
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34469357
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCTAG1049022330.43347457859455No Hit
ACCGGCTC1041226230.207299776436216No Hit
GAGTTAGT668314319.388650040672356No Hit
TTAAAGCA651537918.90194528432892No Hit
ACCGGCTA513510.14897579899735294No Hit
CGTCCTAA411740.11945102428223421No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)