FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90986378
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGGAAG2444045426.86166274252614No Hit
AGTTCGGC2272080424.971654548112685No Hit
GTAATCTT2172667723.879043739932147No Hit
CAGCATCA2119224623.291669001265223No Hit
GTAATCTA1265900.13913071690797496No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)