FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92123124
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTGGCG2587889228.09163527715365No Hit
TTGGCATA2330209425.294511289043996No Hit
CCACTTAT2105514422.855438554168007No Hit
GGTAACGC2103007822.82822931623552No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)