FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987157

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987157
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91843722
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTGGCG2579061428.080976509205495No Hit
TTGGCATA2320655225.267434174760474No Hit
GGTAACGC2099538922.85990652687181No Hit
CCACTTAT2096229822.82387684593183No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)