FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92847368
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTGGCG2613793628.151509906021243No Hit
TTGGCATA2343125725.236317953568697No Hit
GGTAACGC2122470322.859778857705475No Hit
CCACTTAT2114029422.76886728765429No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)