FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97918492
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGCTCG2921223129.833211687941436No Hit
TGGTAAAC2510007325.6336392517156No Hit
CTCCTCTA2224685122.719764720232824No Hit
GAAAGGGT2014291920.571108264208153No Hit
GTCCTCTA1038610.1060688312070819No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)