FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98372498
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGCTCG2936861529.85449754462878No Hit
TGGTAAAC2519621425.613067180626032No Hit
CTCCTCTA2234520622.714891310374167No Hit
GAAAGGGT2020004820.534243219075314No Hit
GTCCTCTA1037200.10543597256216874No Hit
CTCCTCAA1008860.10255508607700498No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)