FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987208

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987208
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90031868
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGAGC3012393533.459191360996755No Hit
TGCTCGTA2481625927.563861054176954No Hit
ATGAATCT2149563523.875584809592088No Hit
GATCTCAG1265640914.057698991650378No Hit
TGCTAGTA1288190.14308155863210567No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)