FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91399430
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGTCGG2899331331.72154684115645No Hit
GTATGTCA2214437424.228131400819457No Hit
ACGACATT2073887322.690374546099466No Hit
TGTCAGAC1844004820.175233040293577No Hit
ACGACATA3106160.3398445701466628No Hit
CACGTCGA1691390.1850547645647243No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)