FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987227

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987227
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91238458
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACC2870180.31458006447237413No Hit
AAGCCGCAGGCTCCACTCCTGGTGGT1609690.1764266993639897No Hit
GTCTCGTTCGTTATCGGAATTAACCA1355470.14856344897893825No Hit
CGTTCGTTATCGGAATTAACCAGACA1186400.13003288591308723No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGA1067630.11701534894419192No Hit
ATGTGTGAGGAGTTCAGTTATATGTT1054400.1155653025174976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)