FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987232

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987232
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91869758
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC3442194137.468196008527634No Hit
AACCGTAA2009873621.877423471606402No Hit
CTAAACGG1947694021.200600093014287No Hit
GGTTTACT1707217218.583016186893627No Hit
CTAAACGA1100290.1197662891416346No Hit
TCGGCGTA929220.10114536276453455No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)