FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86767234
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCATGTG2812959332.419603234096414No Hit
GAAGGAAC2690560631.008947455902536No Hit
TTTCATGA2384852327.485632422026963No Hit
ACGTCCCT67083717.731456554210315No Hit
TTACATGA2234060.2574773790760692No Hit
CGCATGTA1205200.1389003595527777No Hit
TTTCATAA894190.10305618362802715No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)