FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90944251
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTGCG2710507429.804054354133942No Hit
GGACACGT2535034527.874598692335155No Hit
TACTCTTC2298973625.278932694712058No Hit
ATGAGAAA1275882314.029279321900182No Hit
AGGAGAAA15345081.6873062157606862No Hit
TACTCTTA1341260.14748155988441755No Hit
GTGAGAAA1287520.14157244529948354No Hit
CCTGTGCA1273080.13998465939314844No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)